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NibSet-1.gene_models.gff3
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GFF3 file containing the gene models of the filtered, final gene set. Models were predicted on the Nb-1
Nicotiana benthamiana draft genome assembly v1.0.1 available at http://www.solgenomics.net

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NibSet-1.augustus_output.gff3
-----------------------------

The raw output from Augustus. This file contains:
- all unfiltered gene models in GFF3 format
- their transcript sequences
- their protein sequences
Note that the file is a GFF3 with the Augustus output structure (transcript and protein sequences are
within the text)

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NibSet-1.transcripts.fa
-----------------------

FASTA file containing the nucleotide sequences of the isoforms present in the filtered, final gene set.
These sequences are NOT sense-oriented (i.e. they represent the sense-strand for each locus).

--------------------
NibSet-1.proteins.fa
--------------------

FASTA file containing the protein sequences of the isoforms present in the filtered, final gene set.

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NibSet-1.cds.fa
---------------

Coding sequences of the isoforms present in the filtered, final gene set.
Sequences are sense-oriented (i.e. those on the reverse strand do not need to be reverse-complemented).

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Nibenth.func-ann.table
----------------------

Functional annotation of the protein isoforms present in the filtered final gene set.
Columns:
(1) Name of the protein isoform.
(2) Sequence similarity (in %) to the homologous sequence used to obtain the functional annotation.
(3) E-Value of the blastp search to find the homologous protein sequence.
(4) Fraction of the protein isoform sequence (% of total length) that contributed to the alignment.
(5) Length of the alignment (in aminoacids).
(6) Annotated function.
(7) Species which the function was inferred from.